rs239606840 SNP Detail

Summary

• ID
  rs239606840
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:151386066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGACAAG ACAGCCCGCT
  CACATCCTCC TCTCTGTGCC CCCTTACTTC TATGACTTCT TGAGTAGAGA AGCGGGCAGG
  AGATGGCAGA AGTTAAGGAC TAGGACCTTT AAAAAGCTGC CAATGGAAGG AATATTGAAA
  TACATCTTGG CAAGAACAGA CTCTTCTCAT GGACCAAATC GCAGTAGCTG TTGTGGTAAG
  R
  CCAATCAGCA CCTTAGTTTG GGAGGGCTAA TAGAGGAACA GTCATCCGTT TAGTCACCTC
  TGAAAGCAAG TTGAAAAAGG ATGCTGTTGC TTTTTAAAAA ACAAACATGT GTTTAAGGCA
  GTTTTAATAG AGTTCCTCAT TTGTGACCCC CCCCCCACTG TGAGATTATT TTCGTTGCTG
  GTTCATAACT AACTAATTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356131764	MGP_WTSI_2_151369882	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239606840					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356131764	MGP_WTSI_2_151369882	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151386066 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12419	CpG island 12419	780 bp distal
Fkbp1a	FK506 binding protein 1a	within coordinates
Gm14167	predicted gene 14167	1675 bp upstream
Rr397389	regulatory region 397389	1733 bp downstream
Rr397390	regulatory region 397390	132 bp downstream
Tssr20724	transcription start site region 20724	1643 bp downstream
Tssr20725	transcription start site region 20725	1631 bp downstream
Tssr20726	transcription start site region 20726	1500 bp downstream
Tssr20727	transcription start site region 20727	1476 bp downstream
Tssr20728	transcription start site region 20728	1451 bp downstream
Tssr20729	transcription start site region 20729	1323 bp downstream
Tssr20730	transcription start site region 20730	435 bp downstream
Tssr20731	transcription start site region 20731	255 bp downstream
Tssr20732	transcription start site region 20732	137 bp downstream
Tssr26737	transcription start site region 26737	1792 bp upstream
Tssr26738	transcription start site region 26738	1659 bp upstream