rs239609104 SNP Detail

Summary

• ID
  rs239609104
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:74815544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGCCACT CTAATTAATT
  ATACCCATTC ATTTGAGCTG TTGACTATTT CTCAGTCATT GTCTTTCTCT CTCTCTCTCT
  CTCTCTTTTT TGGTTTTTCG AGACAGGGTT TTTCTGTATA GCCCTGGCTG TCCTGGAACT
  CACTTTGTAG ACCAGGATGG CCTCGAACTC AGAAATCCGC CTGCCTCTGC CGGCCCCTCC
  T
  CCCCCAGTGC GGGATTAAAG GCGTGCGCCC GGCATTTTTC TCTTTTGATG GTGAAATATC
  TGTCACATAA CAGGAACTGT ATGAGTACTA TCAAATATTT TATACTATGA TCAAGGCATA
  ACTGGTTATT ACTTTTTGAG GTCTAAAGGG TCAATGACTG TGTGAGACAG GGAAGAAGGA
  AAGACTGGAG AAAGGCAGTC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383890587	MGP_WTSI_11_74738220	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239609104					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383890587	MGP_WTSI_11_74738220	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74815544 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3250	CpG island 3250	685 bp proximal
Gm72316	predicted gene, 72316	1381 bp upstream
Rr451006	regulatory region 451006	1113 bp distal
Rr451007	regulatory region 451007	911 bp distal
Rr451008	regulatory region 451008	245 bp distal
Rr451009	regulatory region 451009	369 bp distal
Rr451010	regulatory region 451010	190 bp proximal
Rr451011	regulatory region 451011	1045 bp proximal
Rr451012	regulatory region 451012	1220 bp proximal
Rr451013	regulatory region 451013	1290 bp proximal
Rr451014	regulatory region 451014	1392 bp proximal
Smg6	SMG6 nonsense mediated mRNA decay factor	1121 bp upstream
Srr	serine racemase	within coordinates
Tssr102917	transcription start site region 102917	1098 bp upstream
Tssr102918	transcription start site region 102918	1119 bp upstream
Tssr102919	transcription start site region 102919	1160 bp upstream
Tssr102920	transcription start site region 102920	1363 bp upstream
Tssr109155	transcription start site region 109155	940 bp downstream
Tssr109156	transcription start site region 109156	1207 bp downstream