rs239611609 SNP Detail

Summary

• ID
  rs239611609
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84497154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTCCTAGC ACTAATCACA
  AACTGTGGTG AGTTTTAGGC TAGCCTTGCA CAGCTTAGTG TGAGAGTGAG ACCATACCCC
  TATAAAGGAA CAAAGCCCTC ACCATCTTAT ATATTAAAGC AAACTGGCTT TTGGCTGTGG
  TCTGAGCAAG GGGCCACCCA GATCTTAGGA CCCTCAAGTG TAGTGACTTA GGGAAGATGG
  Y
  TGCTTCACTC TTCCCACCCA CGTTGCTCTT GCCCCTATTA CTGCTGGGTT CTGTGGCTGA
  AAGGACCCCA AATGTAAGCA TGAGGCTGTG ACTAAGGTTT TCCTGGTTTC TCTCAGGAAA
  GCATGCAGCA GTCGTTCCCC TAGCTACTGC TAGCAGGATT GCAGATACAA GCCCACCTGT
  GGAGCCATCC ATCCCTCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399282325	MGP_WTSI_17_84589066	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239611609					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399282325	MGP_WTSI_17_84589066	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84497154 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9566	CpG island 9566	704 bp distal
Gm36279	predicted gene, 36279	154 bp upstream
Gm56881	predicted gene, 56881	312 bp downstream
Rr333589	regulatory region 333589	within coordinates
Rr333590	regulatory region 333590	1047 bp proximal
Rr340271	regulatory region 340271	353 bp distal
Rr405496	regulatory region 405496	1552 bp downstream
Thada	thyroid adenoma associated	350 bp downstream
Tssr146046	transcription start site region 146046	1100 bp downstream
Tssr149670	transcription start site region 149670	1969 bp upstream
Tssr149671	transcription start site region 149671	1827 bp upstream
Tssr149672	transcription start site region 149672	1772 bp upstream
Zfp36l2	zinc finger protein 36, C3H type-like 2	1779 bp upstream