rs239612088 SNP Detail

Summary

• ID
  rs239612088
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107009764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCACCCT CAGAGTTCGG
  GCTCCTGTGT TTCAGGTGGA GATGGAGTCT TGGTGGTCCC TCGGCTGGAC CTCGCAGGCA
  CCAGCTAGGC TGCCCTCCGG CCCGCAGCGG GAGCCCACCG CACTGCGCAG GAAGGGGTTA
  AGGTGGCACA CTCTAGCGGT CCGGCGGCTG TGGGCTCCGG TCAGCCCAGC GGATTCCGGC
  K
  GGAGCGCGCC CGGCGGAATC CCGGCTGGAA CCCCGGGCGA TGGGAGAGGG CCCAGACCCC
  TCCCCGGCTC TGGGGCCAGC GGGATTGGGT CGGCGGGGGG CCAGCCCGGA AGCCAGCTTT
  CTCTAGGCTC CCCCTCTATG TGAAGCCAAT CCGCCCCGCA GTCAGGCAGC TTGAGCGTTT
  GTTCTGTGCT TCCCTGCCGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359138146	MGP_WTSI_3_106905366	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	T	G	G	G	T	T	T	G	T	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239612088					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	T	G	G	G	T	T	T	G	T	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359138146	MGP_WTSI_3_106905366	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107009764 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13670	CpG island 13670	within coordinates
Kcna2	potassium voltage-gated channel, shaker-related subfamily, member 2	within coordinates
Rr77034	regulatory region 77034	within coordinates
Tssr31156	transcription start site region 31156	1459 bp downstream
Tssr31157	transcription start site region 31157	1391 bp downstream
Tssr31158	transcription start site region 31158	1167 bp downstream
Tssr31159	transcription start site region 31159	886 bp downstream
Tssr31160	transcription start site region 31160	863 bp downstream
Tssr31161	transcription start site region 31161	799 bp downstream
Tssr31162	transcription start site region 31162	779 bp downstream
Tssr31163	transcription start site region 31163	736 bp downstream
Tssr31164	transcription start site region 31164	645 bp downstream
Tssr31165	transcription start site region 31165	132 bp upstream