rs239612979 SNP Detail

Summary

• ID
  rs239612979
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142621118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGAAGCT GTACCTCATT
  GGAATTGCAG CCATTGTGGT AGCTGTCATT ATGGTAAGCA CAGGGTCTCT GGTGGGTGGG
  TGGGATCCTT CCCAGGGCCT TAGGTGCTGA CTATGCCCCT CCCTCCTGCA GATCTTTGAG
  ATGATTCTGA GCATGGTGCT GTGCTGTGGC ATCCGGAACA GCTCCGTGTA CTGAGGCCCT
  Y
  TGCATTGCAC CAGAGGATCC CTGGAGTGAC CAGAGGCCAC CTTGGGGGAC ATGGCCTGTG
  TATATAATAT TTCTGTATCA CTCTGCTACA CTTAGTCTTT TTACTTTTGA GTTTTTTGTT
  TTGTTTTGTT TTGTTTTTGT TTTAGTTTTT TTTTTTGTCC TGAACTTTTC CTGTTACCTT
  TTGGGAGCTG ACATCACACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373462656	MGP_WTSI_7_150253286	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239612979					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373462656	MGP_WTSI_7_150253286	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142621118 () rs orientation: forward

Symbol	Name	Function Class
Cd81	CD81 antigen	within coordinates
Cpgi19972	CpG island 19972	1506 bp proximal
Tssc4	tumor-suppressing subchromosomal transferable fragment 4	1868 bp upstream
Tssr2467	transcription start site region 2467	1566 bp downstream
Tssr70275	transcription start site region 70275	1618 bp downstream
Tssr70276	transcription start site region 70276	1587 bp downstream
Tssr70277	transcription start site region 70277	1432 bp downstream
Tssr70278	transcription start site region 70278	642 bp downstream
Tssr70279	transcription start site region 70279	within coordinates
Tssr70280	transcription start site region 70280	20 bp upstream
Tssr70281	transcription start site region 70281	154 bp upstream