rs239614230 SNP Detail

Summary

• ID
  rs239614230
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:98180859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTCTTCG GGGTGAGGTC
  GTGCACCCCC AAGTGCGTGG GGGGGGTTGT CCGTAGGAGG TGCGGCGCCC TATTTTATAT
  CTGGCCTTTT CTAGTGTTTT CTTGCGGGCA GTCGGGGTAG GGTGCGGAAG GGTGGGGTGG
  GGGCACTTAG CTGCGTTTCG ATCCTTCGGT TTGGCCCTAC TCTCAAGTCC GGATCGCGTC
  Y
  GTTGGTCACA CCAGGCAGAT ATAGAATGTC TGGGCGCTCC AGAGCGCACC CGAGAGCTGG
  GTGGGGGCGA GTAAGCAGCC CACTCCAGGG CCTCTGGGAA CGTGGTGGTT TTCACTCACA
  GCCACTCCAG GGGTGAGATC GACCTGAGCA AGGGACCAGG CCAGAACACA GGTTCCTCAT
  TTGCTTAGGT GTCAGGGCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss404146315	MGP_WTSI_X_96332592	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs239614230					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404146315	MGP_WTSI_X_96332592	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:98180859 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22850	CpG island 22850	9 bp distal
Efnb1	ephrin B1	within coordinates
Rr406150	regulatory region 406150	1107 bp downstream
Rr692629	regulatory region 692629	1113 bp distal
Rr692630	regulatory region 692630	within coordinates
Tssr161599	transcription start site region 161599	1169 bp downstream
Tssr161600	transcription start site region 161600	1146 bp downstream
Tssr161601	transcription start site region 161601	1115 bp downstream
Tssr161602	transcription start site region 161602	1070 bp downstream
Tssr163842	transcription start site region 163842	1303 bp upstream