rs239614441 SNP Detail

Summary

• ID
  rs239614441
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91067339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGGCATT TCTTGGGAGC
  CATGACGTAC TCGGTGAAGA GATATCAAGC TCTGTGGCAA AATAACGAAG CAAGGAGTGG
  AAAAGCCTCC GTGGAGAAAA CAGGAAGGGA CTACGTATGA GGCAGCGCCG TCGCAGGTAG
  CGCAGCTAAG ACACCTTCGC GCCAAACGCT CCTCCGGGCT GCTTTACTTT TAGCCCCGCC
  Y
  CGTCCCCTCA GGGCTGTCCC GCCCCTTGGA ACTGCCCCGC CCCCTCGGGA TTGCCACAGT
  AGGGGGCTGT CTTGCCCCCG GAACTGCCCC GGACTGCCCC AACCCCTCGG GCACGGCCCG
  CCCCCGGCCG CTCCTCCTCT TCCGGAGTAA CGTGTGCAGC TCACAGGGAG GGTTTTTTAT
  TTTAACTCCC TAGGAGCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354810012	MGP_WTSI_2_91077151	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239614441					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354810012	MGP_WTSI_2_91077151	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91067339 () rs orientation: forward

Symbol	Name	Function Class
A330069E16Rik	RIKEN cDNA A330069E16 gene	152 bp upstream
Cpgi11902	CpG island 11902	within coordinates
Ddb2	damage specific DNA binding protein 2	12 bp upstream
Rr397126	regulatory region 397126	within coordinates
Rr560675	regulatory region 560675	1374 bp distal
Rr560676	regulatory region 560676	within coordinates
Rr560677	regulatory region 560677	152 bp proximal
Rr560678	regulatory region 560678	283 bp proximal
Rr560679	regulatory region 560679	600 bp proximal
Rr560680	regulatory region 560680	986 bp proximal
Tssr18884	transcription start site region 18884	116 bp upstream
Tssr18885	transcription start site region 18885	178 bp upstream
Tssr25176	transcription start site region 25176	139 bp upstream
Tssr25177	transcription start site region 25177	122 bp upstream
Tssr25178	transcription start site region 25178	73 bp upstream
Tssr25179	transcription start site region 25179	29 bp upstream
Tssr25180	transcription start site region 25180	5 bp upstream