rs239617241 SNP Detail

Summary

• ID
  rs239617241
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:51893958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTACAAAT ACACTGTAGC TGTCTTCAGA CACACCAGAA
  GAGGGCATCA GATCCCATTA CAGATGCTTG TGAGTAACCA TGTGGTTGCT GGGAACTGAA
  Y
  TCAGGACCTC TGGAGTAGTA GTCAGTAATC CTAACCGCTG AGCCATCTCT CCAGCCCTAA
  ACTGTTTTTT GTTTTTGTTT TTAAAAAAGC AAACTAGTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323669666	CHEV_11_51816633	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239617241					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:51893958 () rs orientation: forward

Symbol	Name	Function Class
Cdkl3	cyclin dependent kinase like 3	1090 bp upstream
Cpgi2847	CpG island 2847	921 bp proximal
Gm12204	predicted gene 12204	1220 bp downstream
Rr246699	regulatory region 246699	1357 bp distal
Rr246700	regulatory region 246700	42 bp proximal
Rr386068	regulatory region 386068	within coordinates
Tssr101304	transcription start site region 101304	1060 bp upstream
Tssr101305	transcription start site region 101305	1089 bp upstream
Tssr101306	transcription start site region 101306	1182 bp upstream
Tssr101307	transcription start site region 101307	1209 bp upstream