rs239619659 SNP Detail

Summary

• ID
  rs239619659
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96141827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAAGACAT CAGTCATTTT
  AGAGGTACTT CATAGTTATT CCTCGTGGAA ACAATTCTAG TGGTAGTTTT TACTTTCATT
  TTTTTCCAAT AAATAAAATA AGGTTTCCTC TTATTAAATA TTTTCCCATT TATGAAAACT
  TTCAAATTGT CAACAATAAA GTATGCTTCC TCAGAATCTT TAGAAATCAA CCTGACAGAC
  R
  AAAAAAATTC AGCCTTTGTA GTTATTTCGT TCCTTTTTTC CCCTAGTACA ATTTTCTTCA
  AAGTATTTGT GCTTTGAAAA TGTCAGCTGT ATTCTAATGA AGCTCCGGCA TTGTTTGCTC
  ATAAAGGAGC CGGTGCATTC CACTGCTTGA CGGTTTATTA TGAGGCGCCG TGGGAGAGGG
  GGTGGCACCA TTTGGTGTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323107366	CHEV_9_96160193	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239619659					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96141827 () rs orientation: forward

Symbol	Name	Function Class
Tfdp2	transcription factor Dp 2	within coordinates
Tssr2975	transcription start site region 2975	540 bp downstream
Tssr86589	transcription start site region 86589	1063 bp downstream
Tssr86590	transcription start site region 86590	1048 bp downstream
Tssr86591	transcription start site region 86591	989 bp downstream
Tssr86592	transcription start site region 86592	972 bp downstream
Tssr86593	transcription start site region 86593	944 bp downstream
Tssr86594	transcription start site region 86594	761 bp downstream
Tssr86595	transcription start site region 86595	513 bp downstream
Tssr86596	transcription start site region 86596	497 bp downstream