rs239623293 SNP Detail

Summary

• ID
  rs239623293
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144942651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGCAGTG TCTCTGTAGT
  CTCACACGGG GACTGAGACG GACACTCCTC CTGAGAGAAG GGGACCTGCT CATCCTTTGG
  GGACGCTGAG GGCTTGGCAT CTGGGTCTCC CACTGTGGCG CTGGCTTGGG AAGAGCACTG
  AGAACTGTGG TCAGAGCTGC TACAGACGTT CACGATGCAG GTGACGTTGA CGTGGGTCCC
  R
  TGGCTTCCGT GGGAAGAATC TGTGAAGCAC AGGATGGGAG GGTGAGTCTG GGGATCTTGG
  AGACAGGGTG TCTTTGCAGT TTGCCTCTTG TCCCAGGGGC AGGTTAGAGC AATAGGCCAA
  GGGCCAAGAG GCTAAAGACC CTAGCTCACC TCTACTACGA TGGCAGATGC ATCACCCTTA
  CATGCCTGTG TGCTCACTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363595803	MGP_WTSI_4_144805984	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239623293					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363595803	MGP_WTSI_4_144805984	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144942651 () rs orientation: forward

Symbol	Name	Function Class
Rr87265	regulatory region 87265	1051 bp distal
Rr97118	regulatory region 97118	1722 bp proximal
Rr103537	regulatory region 103537	within coordinates
Tnfrsf1b	tumor necrosis factor receptor superfamily, member 1b	within coordinates
Tssr40195	transcription start site region 40195	1782 bp downstream
Tssr44490	transcription start site region 44490	1864 bp upstream
Tssr44491	transcription start site region 44491	1686 bp upstream
Tssr44492	transcription start site region 44492	1470 bp upstream
Tssr44493	transcription start site region 44493	1317 bp upstream
Tssr44494	transcription start site region 44494	1073 bp upstream
Tssr44495	transcription start site region 44495	1019 bp upstream
Tssr44496	transcription start site region 44496	948 bp upstream
Tssr44497	transcription start site region 44497	830 bp upstream
Tssr44498	transcription start site region 44498	686 bp upstream
Tssr44499	transcription start site region 44499	641 bp upstream
Tssr44500	transcription start site region 44500	555 bp upstream
Tssr44501	transcription start site region 44501	512 bp upstream
Tssr44502	transcription start site region 44502	414 bp upstream
Tssr44503	transcription start site region 44503	302 bp upstream
Tssr44504	transcription start site region 44504	236 bp upstream