rs239625664 SNP Detail

Summary

• ID
  rs239625664
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:22715003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCTGAAG GTTGAGGGCC
  AGGAGATGCT GGGTTTCCAT CCCTGCCGGA CTAAAGTTAG CCTTTTGGCT TCCTGTTTCC
  TCTCTGAAAA CTTAACCTCT GCCCCATGCG ATGGACAACG ATCTCTTGCC AATACTTTGA
  GAAGACTCAG ATCTTTCATC TGCAGCCCAT CGTCAGAACT CAATCCTTCC AATTGCCCAG
  R
  GCCACACGTA GTCCGTGTGG ATTTGTGTTC TCTCAAACTG TGCCAGACCA TAGCTTCTCC
  TCTCCATCCC TCCCACCCTC CCTCTTACCT TCCTTCCTCC TCTCCTTTGC TCCCTCCCTC
  CCTCTCCCTC CTCCTCTCTG TCACTTCCTC CCTCTATCCC ACCTCTCCTT CCCCCCTCCC
  TCCCTCTGTC CCACCTCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395628393	MGP_WTSI_16_22896326	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239625664					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395628393	MGP_WTSI_16_22896326	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22715003 () rs orientation: forward

Symbol	Name	Function Class
Ahsg	alpha-2-HS-glycoprotein	within coordinates
Gm30505	predicted gene, 30505	1867 bp upstream
Tssr4819	transcription start site region 4819	912 bp downstream
Tssr4820	transcription start site region 4820	296 bp downstream
Tssr137564	transcription start site region 137564	1982 bp downstream
Tssr137565	transcription start site region 137565	1845 bp downstream
Tssr137566	transcription start site region 137566	1836 bp downstream
Tssr137567	transcription start site region 137567	1468 bp downstream
Tssr137568	transcription start site region 137568	1437 bp downstream
Tssr137569	transcription start site region 137569	1416 bp downstream
Tssr137570	transcription start site region 137570	1399 bp downstream
Tssr137571	transcription start site region 137571	1061 bp downstream
Tssr137572	transcription start site region 137572	962 bp downstream
Tssr137573	transcription start site region 137573	952 bp downstream
Tssr137574	transcription start site region 137574	933 bp downstream
Tssr137575	transcription start site region 137575	923 bp downstream
Tssr137576	transcription start site region 137576	238 bp downstream
Tssr137577	transcription start site region 137577	169 bp upstream
Tssr137578	transcription start site region 137578	240 bp upstream
Tssr137579	transcription start site region 137579	1862 bp upstream
Tssr137580	transcription start site region 137580	1912 bp upstream
Tssr140504	transcription start site region 140504	1861 bp upstream
Tssr140505	transcription start site region 140505	1812 bp upstream
Tssr140506	transcription start site region 140506	1392 bp upstream
Tssr140507	transcription start site region 140507	1029 bp upstream
Tssr140508	transcription start site region 140508	987 bp upstream
Tssr140509	transcription start site region 140509	969 bp upstream
Tssr140510	transcription start site region 140510	921 bp upstream
Tssr140511	transcription start site region 140511	907 bp upstream
Tssr140512	transcription start site region 140512	304 bp downstream
Tssr140513	transcription start site region 140513	315 bp downstream
Tssr140514	transcription start site region 140514	348 bp downstream
Tssr140515	transcription start site region 140515	1923 bp downstream
Tssr140516	transcription start site region 140516	1942 bp downstream