rs239630034 SNP Detail

Summary

• ID
  rs239630034
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:151925609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CACAGGTCT GGAATCCATA GGATCCCTTG
  GGAGACTAAC ATAAAACTCC TGCAGACGCT TGCTTGATCC TGTCCCCGGG CCAGCTGAGG
  AAACCCAGAG AAACCCAGAG AATTTCTCAT GCACAGCCAA AACTGCAGGC TGTTCCTCAG
  R
  AGGAGGCAGG AGAATGCCTT GCCTTGAATT CTATCCAAAA AAGCTTTGGA AAAAGCCCCT
  TAGTGAATGA TGGGAAGTAC AGATGGAAAT GGAGTTGTCT TTATGCAGGT CCCACCAGGT
  TCAGTAGCCT AAAACCATCC GTCTTTGTCC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320562099	CHEV_2_151909425	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239630034					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151925609 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12435	CpG island 12435	1018 bp distal
Rr567277	regulatory region 567277	106 bp distal
Rr567278	regulatory region 567278	523 bp proximal
Scrt2	scratch family zinc finger 2	Intron
Tssr20760	transcription start site region 20760	1864 bp downstream
Tssr20761	transcription start site region 20761	1796 bp downstream