rs239631935 SNP Detail

Summary

• ID
  rs239631935
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:78074140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCATATGCA CGATACCACA
  GGCAAAGATA ATTAACCCGT TGTACCATCA CGTGGGTGCG TATAACCCCA TTTAACGTGG
  GGAAAGGGCG AATAAGGACT ACTTTTAATC CCTTATAGGT CTGGAGACCC GGAGCGCCAC
  CCTGTGGATG TTAAGGAGCT TCCCAAAGTC AAATGCTTGG CCATCAGTGG CGGCCGCTGC
  S
  GGCCCGGTGG CTTTGCCAAT CCCCTGCACT GGAACCAGCC CATGCGGCTT GGCCCACGCG
  GTCCTCATAC CCCGCAGCGG GGCCTAGTCG CGACAGTAGC CACAGAACAA GCCCCCCATG
  GCTTAGCCGG GCATTCTTCT TCCCCGCGAG TTCGCTCTGC GGGTATCCAA GACCGACCTG
  ACAGATTCCC ATACCGCAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323756292	CHEV_11_77996816	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239631935					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:78074140 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3335	CpG island 3335	within coordinates
Rpl23a	ribosomal protein L23A	within coordinates
Rr402760	regulatory region 402760	124 bp upstream
Rr451902	regulatory region 451902	269 bp distal
Rr451903	regulatory region 451903	49 bp distal
Rr451904	regulatory region 451904	260 bp proximal
Snord4a	small nucleolar RNA, C/D box 4A	1558 bp upstream
Snord42a	small nucleolar RNA, C/D box 42A	1968 bp upstream
Snord42b	small nucleolar RNA, C/D box 42B	201 bp upstream
Tssr109378	transcription start site region 109378	98 bp upstream
Tssr109379	transcription start site region 109379	237 bp downstream