rs239642818 SNP Detail

Summary

• ID
  rs239642818
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:24790376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGTCAGGCG CTTGTTCTCA
  TGCCTCACGG GCTCCACCCA GCATGAAGGC AGGACCAGAG CTCCCTGCAG CACAGCAGTT
  AATAGCTGCA TGTGGCTATT GAAGATTTAA CATTTGGAAC TGAATTTTAA ATTTTGATTA
  AGCTTTAATG TAAATAACTA CATGTGGCCA CTGTATTGTA CAAGGTACTT TAAAGGTACA
  Y
  CGCTATTTTG TGCAATTAAC TCAGTAATAT TTATCTTAAA CACCATAGAG GCAGTAATTA
  GGCTCATACA CTAGGACTGC ATGTGAAAAG TCTTGACGGT CAAGCCTTAC TAACATGCAT
  TAATTTTTAA AACAATAAAA ATCCCTTTGT GGAGCCAATT TACATTCCCG AGTTCCCTGC
  CTTTGCTGGA AAGTTCAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379755365	MGP_WTSI_10_24634284	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239642818					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379755365	MGP_WTSI_10_24634284	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:24790376 () rs orientation: forward

Symbol	Name	Function Class
Arg1	arginase, liver	729 bp downstream
Med23	mediator complex subunit 23	1018 bp downstream
Tssr92746	transcription start site region 92746	1142 bp upstream
Tssr92747	transcription start site region 92747	1215 bp upstream
Tssr97085	transcription start site region 97085	1014 bp downstream
Tssr97086	transcription start site region 97086	1060 bp downstream
Tssr97087	transcription start site region 97087	1094 bp downstream
Tssr97088	transcription start site region 97088	1152 bp downstream
Tssr97089	transcription start site region 97089	1171 bp downstream
Tssr97090	transcription start site region 97090	1202 bp downstream
Tssr97091	transcription start site region 97091	1593 bp downstream
Tssr97092	transcription start site region 97092	1613 bp downstream
Tssr97093	transcription start site region 97093	1637 bp downstream
Tssr97094	transcription start site region 97094	1653 bp downstream
Tssr97095	transcription start site region 97095	1667 bp downstream
Tssr97096	transcription start site region 97096	1932 bp downstream