rs239646461 SNP Detail

Summary

• ID
  rs239646461
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164752410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCGGCCC TCCCGTTCCA
  TTTGACAGAT GGGAAGACTA AGATAACTGA GATGGATCAA CATTTGAACC GGGCTCATGG
  AGCCTGAGGG CTCTGGGTAA GACCATGGAT AATTCTGGCT CTGTCGATAG CAAGCACGCT
  CTGCCTCAGT TTCCCTTTCT GAAGATTCTG GAAACAAGTG GTTTAAGTAT GTCTCTTAGC
  M
  ATGGGACTTG TCAAAACCGA CCACAGCAGT TTGGCATGGC ATGGCTTGGC GTCTGCCTCA
  AAAACAGTTA TTTTCTACAA GTAGGCTTTG CTGACGGTCC CCCTGCCCAC ACCATCCACA
  CTGATCCATA CCACAGAGTG GTTGCCACCG TCCGAGCTCT GCCCGACGCC AGAGTCGTCA
  GCCTCCGTTA ATCCTGGGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356443479	MGP_WTSI_2_164735990	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239646461					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356443479	MGP_WTSI_2_164735990	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164752410 () rs orientation: forward

Symbol	Name	Function Class
2210414I22Rik	RIKEN cDNA 2210414I22 gene	1400 bp upstream
Cpgi12677	CpG island 12677	4 bp proximal
Rr367365	regulatory region 367365	22 bp upstream
Rr569758	regulatory region 569758	824 bp distal
Rr569759	regulatory region 569759	716 bp distal
Rr569760	regulatory region 569760	374 bp distal
Rr569761	regulatory region 569761	404 bp proximal
Rr569762	regulatory region 569762	838 bp proximal
Rr569763	regulatory region 569763	905 bp proximal
Rr569764	regulatory region 569764	1219 bp proximal
Rr569765	regulatory region 569765	1257 bp proximal
Rr569766	regulatory region 569766	1407 bp proximal
Tssr21686	transcription start site region 21686	937 bp upstream
Tssr27593	transcription start site region 27593	685 bp downstream
Tssr27594	transcription start site region 27594	728 bp downstream
Tssr27595	transcription start site region 27595	768 bp downstream
Tssr27596	transcription start site region 27596	1070 bp downstream
Tssr27597	transcription start site region 27597	1096 bp downstream
Zfp335	zinc finger protein 335	Intron
Zfp335os	zinc finger protein 335, opposite strand	943 bp upstream