rs239646728 SNP Detail

Summary

• ID
  rs239646728
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:15539405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCCAGTG GGTTGCCATG
  GAGACGCGGC CTCCGCACCA GTCCGCTTCC TTCTAGCGGG AACTCCCCAG CACTGGCGCG
  GCCAGGTCAG TCCTCAGCCC GCCCAACCCG CTTAGCTGCG GCCCGCGGCT ACCCAGAGGC
  GCGAGAGAAA CGCGGGAGGA CACTGCCCAA CCAGAGAACC GGTGGGTCAC CAAGAACGCC
  D
  CCGCAGAGAC TGGGCCTCAA CCCTCTTCCC TTTGAATTCA CCTTAGTAAC TTCCAGCTGG
  GAATTGGTTA GGCTCACTCC ACTGTCACTG TATTAGCACC ATTTAAACCC CTCTCTTCCT
  CACAGTTCGC TGCGTCCTTG GAAAACTGCC AGTTAGGTGG ATCAGGCTGT ATTGGGGACA
  AGGGAGTAGC TTCTAATGGT                                            
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss376737731	MGP_WTSI_9_15432553	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	T	A	T	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs239646728					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	T	A	T	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376737731	MGP_WTSI_9_15432553	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:15539405 () rs orientation: forward

Symbol	Name	Function Class
4930540M03Rik	RIKEN cDNA 4930540M03 gene	within coordinates
Cpgi21372	CpG island 21372	within coordinates
Deup1	deuterosome assembly protein 1	176 bp upstream
Rr674358	regulatory region 674358	217 bp distal
Rr674359	regulatory region 674359	164 bp distal
Rr674360	regulatory region 674360	within coordinates
Tssr83870	transcription start site region 83870	139 bp downstream
Tssr88249	transcription start site region 88249	275 bp upstream
Tssr88250	transcription start site region 88250	258 bp upstream
Tssr88251	transcription start site region 88251	225 bp upstream
Tssr88252	transcription start site region 88252	202 bp upstream
Tssr88253	transcription start site region 88253	187 bp upstream
Tssr88254	transcription start site region 88254	174 bp downstream
Tssr88255	transcription start site region 88255	217 bp downstream