rs239647566 SNP Detail

Summary

• ID
  rs239647566
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:78524409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTATTGG GGTGGATCTC
  CTGGAAAATA GCCCCCCACA GGTCCTTGTA AAGGCTCAGG TGTTCAAGAT AGCTTCCAAC
  AAATCGAGAT CCATCCTGGA AGCAGAAGGA GTCTTTCACA GAGGTAAGAG AAACTGCACT
  GTCTAACAGT CACACTTGGA ATATGGTAAT AGAGCCCTGG GCTAGGCAAC ACAACAGAGG
  W
  GCACAAACAA GTTTGCAGTG ATTTCCACAG TGCCCCTTTG CAAATTAGCC GTGACTTCCA
  CAGGTGCCTG TTTGATTCTA ACACCTGTGA AGTCTGAAAT TGTCCCCGAG TGTTCCAACA
  AGTGGACAAA GAGCCAGATT CCTTCCGTGT GTGGCTGCAT CGAATCAGAC TGCAGGGGAA
  GAACATCCGG AGTTTCCTAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378161695	MGP_WTSI_9_78464934	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239647566					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378161695	MGP_WTSI_9_78464934	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78524409 () rs orientation: forward

Symbol	Name	Function Class
Cd109	CD109 antigen	Intron
Cpgi22073	CpG island 22073	1043 bp distal
Gm69315	predicted gene, 69315	1470 bp upstream
Rr683598	regulatory region 683598	1571 bp distal
Rr683599	regulatory region 683599	980 bp distal
Tssr86295	transcription start site region 86295	1653 bp downstream
Tssr86296	transcription start site region 86296	1634 bp downstream
Tssr86297	transcription start site region 86297	1618 bp downstream
Tssr86298	transcription start site region 86298	1384 bp downstream
Tssr86299	transcription start site region 86299	1341 bp downstream
Tssr86300	transcription start site region 86300	1318 bp downstream
Tssr86301	transcription start site region 86301	1295 bp downstream
Tssr86302	transcription start site region 86302	1246 bp downstream
Tssr90659	transcription start site region 90659	1470 bp upstream