rs239650827 SNP Detail

Summary

• ID
  rs239650827
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126620854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTGGAGG CACCCTGAGC
  AGCATAGATG GGTTAAGCAA ACAGGTCTAA GTTTGGGGTG GCTGCAGGGG AACTGCGTGG
  GGTTTCAAGA GAAGGGAGCC TGCAGAACTG AAGCCTTCCT ACTCTTGGAA AGCAGCAGCA
  GCAATGCGTG ATGGAAGCTT AAGGGAGGGT CTTTGTAAAG GTTTGAGCAA AGCCCAGAAA
  W
  GGAAATTCCA GCAAGCTAGG AAGGGCCAGG GCAAGCAGTC CATGACCACC ACAGTGGGAC
  CCGAATGCAG CTTACTGAAC CCTGTGTCAA CCATGGACCC TGGGATCTGT ATGTGCAGCC
  TGGTGCTGGG TTGTAGACAG GACAGCATCA ATAACTAGCT TGGCATCCCT AATCTCCAGT
  GGGTATTCTG TGCCTGTTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373079222	MGP_WTSI_7_134165196	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239650827					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373079222	MGP_WTSI_7_134165196	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126620854 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19726	CpG island 19726	253 bp distal
Gm42742	predicted gene 42742	585 bp upstream
Gm53372	predicted gene, 53372	within coordinates
Maz	MYC-associated zinc finger protein (purine-binding transcription factor)	452 bp downstream
Prrt2	proline-rich transmembrane protein 2	471 bp upstream
Rr655670	regulatory region 655670	556 bp distal
Rr655671	regulatory region 655671	285 bp distal
Rr655672	regulatory region 655672	322 bp distal
Rr655673	regulatory region 655673	within coordinates
Tssr69153	transcription start site region 69153	320 bp downstream
Tssr69154	transcription start site region 69154	268 bp downstream
Tssr69155	transcription start site region 69155	235 bp downstream
Tssr74891	transcription start site region 74891	1984 bp upstream
Tssr74892	transcription start site region 74892	1879 bp upstream
Tssr74893	transcription start site region 74893	1765 bp upstream
Tssr74894	transcription start site region 74894	1572 bp upstream
Tssr74895	transcription start site region 74895	1539 bp upstream
Tssr74896	transcription start site region 74896	1362 bp upstream
Tssr74897	transcription start site region 74897	1346 bp upstream
Tssr74898	transcription start site region 74898	625 bp upstream
Tssr74899	transcription start site region 74899	547 bp upstream
Tssr74900	transcription start site region 74900	530 bp upstream
Tssr74901	transcription start site region 74901	493 bp upstream
Tssr74902	transcription start site region 74902	466 bp upstream
Tssr74903	transcription start site region 74903	87 bp upstream
Tssr74904	transcription start site region 74904	47 bp upstream