rs239653530 SNP Detail

Summary

• ID
  rs239653530
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:120603428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTAGGTCT GGAGAAACCT
  AGCTGTAATG ATGAGTACCA GGTGGTGGCG GCAGATTGGC CAGGCATCTG GAATGGCTTG
  AGAACTGAAA GGTTGGTGGT AGTTTGTGAG GTGGAGATGA GAGGGAGAAT CCAGAGGCCT
  AGGAATCCCG TGAGAGCACC AAAGGTGAGC CATGAGGAGC CCCCGAGCAT CTGTGCAGTG
  W
  GTGAAGCCGA GACCACTCAA GTTTGCCTAG TCCAGAACAG AATGGGGAAC GACCAGGGAA
  AGGCAAAAGG TAGGCAGCGA CAGGCACCCA CGACCCTCGA AGTGGATGGC CTACAAAGAA
  AGGTGAGTTT GGATTCACGA GCGTCAGCCA CAGAGAAGCC TTGATACCCA CTCGCTGCAG
  AGGGGCACGG GTGGAAATGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384948074	MGP_WTSI_11_120573916	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	T	A	A	A	T	T	T	A	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239653530					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	T	A	A	A	T	T	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384948074	MGP_WTSI_11_120573916	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:120603428 () rs orientation: forward

Symbol	Name	Function Class
Cenpx	centromere protein X	within coordinates
Cpgi4325	CpG island 4325	25 bp proximal
Lrrc45	leucine rich repeat containing 45	1351 bp upstream
Rr232583	regulatory region 232583	1028 bp distal
Rr232584	regulatory region 232584	28 bp distal
Rr246348	regulatory region 246348	within coordinates
Rr403203	regulatory region 403203	1055 bp upstream
Tssr106342	transcription start site region 106342	1317 bp upstream
Tssr106343	transcription start site region 106343	1376 bp upstream
Tssr112368	transcription start site region 112368	1439 bp upstream
Tssr112369	transcription start site region 112369	1123 bp downstream