rs239656535 SNP Detail

Summary

• ID
  rs239656535
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:109906238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCTAGCA AATTCTTGAG
  TCTAAGGAGA AGGCTTGGGA GCATACAGCT ATGTCGCTGG AGGATGGTCT TGTGCGCCCA
  TGCAGACTGT GCCGTCTCTG GGGAGTTAGT ATCAAAGCCG AACTGAATTG TTGGACAAGC
  CACTTGGTAT AGGATTATGT GGGGAAAAAA TGACATGCAA TTTGCATATG TAAGAAAAGA
  Y
  AGCATCAGTC AGAGCCAAGC TGTATGTGCA AAGTACACCC TGGCTTCTGA GGACTTAGTA
  TGAACAAATG AACCACCTCG TGATGAGTTT TGTATGATGA CTTTAAAATA GCCTTTGAAT
  ATGTGGGTTA TATAAAGAGG CTGCATTACT AGGCTGCATA TGATGGCACA CACCCACAAT
  CCTGAGAGGG CATTGCCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322395866	CHEV_7_117450545	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239656535					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109906238 () rs orientation: forward

Symbol	Name	Function Class
Rr159222	regulatory region 159222	1237 bp distal
Rr159223	regulatory region 159223	838 bp distal
Rr159224	regulatory region 159224	38 bp distal
Sbf2	SET binding factor 2	982 bp downstream