rs239661920 SNP Detail

Summary

• ID
  rs239661920
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:37419133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACAAGCCT GCTGGGATCG
  GGCGGAAGGT GCAGGGGTTA AATCGGGCTG TGCATCCAAA AGGAAGGCAA AAAGGCAGCG
  CTCATCCCAA GAAAGTCCTC GCGCAACAAG CCCACTCCCC ACTAGGGCTC CAGACAAACT
  TTGAGACTCC CTTGGGCTCT TGAGCTCTGC CCCTGGATCC AGAGGCGACC CCACCTCCTT
  S
  CAGGCCAGTG ACCAATCGAA CGCCCGTCTT GCCATCTATA CCGTATCAAA AGTCCCTTTC
  TCATCCATGT CCCTCCCCCA GAGGGAGAGT CGCGCGAAGT CTCCGCCTAG TCCTCGGAAT
  GTGGGCGGAG AGGGTCTTTT ACGTCACTGG GGAACGCCTC CTGCCGGAGC GTCGCAATGG
  ACCAATAGGG TGCTAGGGTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367987512	MGP_WTSI_6_37392198	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239661920					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367987512	MGP_WTSI_6_37392198	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:37419133 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17302	CpG island 17302	within coordinates
Creb3l2	cAMP responsive element binding protein 3-like 2	50 bp upstream
Gm33318	predicted gene, 33318	312 bp upstream
Gm67278	predicted gene, 67278	309 bp downstream
Rr399613	regulatory region 399613	within coordinates
Rr628663	regulatory region 628663	63 bp distal
Rr628664	regulatory region 628664	within coordinates
Rr628665	regulatory region 628665	151 bp proximal
Rr628666	regulatory region 628666	357 bp proximal
Rr628667	regulatory region 628667	1963 bp proximal
Tssr55612	transcription start site region 55612	303 bp upstream
Tssr55613	transcription start site region 55613	345 bp upstream
Tssr60356	transcription start site region 60356	270 bp upstream
Tssr60357	transcription start site region 60357	44 bp upstream
Tssr60358	transcription start site region 60358	26 bp upstream