rs239665719 SNP Detail

Summary

• ID
  rs239665719
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137747760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGACCCTGT CTCTTGCCCC
  ACAGTGTCCC CAGCCCCACC CCCCTTCCTT CCTCCCGGTC GGCCTCGATC ATTTCCTGTG
  TGCTTATAAC TGTCACTATT TCCATGTCTC AAGAGTTAGA CTTTCTTCAT TCAGTTTTAT
  GGTCGGAGAA GAGCTGAGGG AGGTTGACAG GGGACAGGAG GTAGGTGACA CCTGTGTCCC
  M
  TTTGGCTTTC CTGAGGTGGG GGGCCTCTTA GGGGCCCACC CTCATAGAGG CTTCTTGTCC
  AGTTCCTGTC ACATCTGCCC TTTTACAGCA CACCCCAGCC TCTGCCTGTT GGGCTTTGTA
  GGTCCACACC CAGGCTCCTC CCTCCCCCTC CCATTCTCAC AGAGCTCCAC CCCCCACCCC
  CAAAGGCAGA GAATCTTTGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366884420	MGP_WTSI_5_138190726	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	C	C	C	C	A	A	A	A	C	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239665719					SNP	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	C	C	C	C	A	A	A	A	C	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366884420	MGP_WTSI_5_138190726	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137747760 () rs orientation: forward

Symbol	Name	Function Class
Gm57848	predicted gene, 57848	within coordinates
Rr622974	regulatory region 622974	1905 bp distal
Rr622975	regulatory region 622975	within coordinates
Rr622976	regulatory region 622976	1908 bp proximal
Tsc22d4	Tsc22 domain family, member 4	within coordinates
Tssr49379	transcription start site region 49379	1965 bp downstream
Tssr49380	transcription start site region 49380	1856 bp downstream
Tssr49381	transcription start site region 49381	1814 bp downstream
Tssr49382	transcription start site region 49382	1764 bp downstream
Tssr49383	transcription start site region 49383	528 bp downstream
Tssr54036	transcription start site region 54036	1508 bp upstream