rs239666614 SNP Detail

Summary

• ID
  rs239666614
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105721921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAGCCAC GATCCTCAGG
  AGGCTGTGTC CTCTCAGAAT GGGTCAGGCT TGGACCTCAC TTCCTTGGCT TCTAGCAATT
  AGGACCATTT GGACAAACCC TAAACCCTGC TACCTTCTTC AGCTATGTGG TAGGCCTGCT
  ACCATGCCTG TCTTCCATGT GAGTCAGAGG GGAGTTATGG GGCTAACAGG AACTTTGGAT
  R
  GCAAGTCTGC CCTGCACACC TGACCAGAGA GCAGTCAAGC AGTAGAGAAG CCAGAGGAGT
  AGAGTGGAGC CACGGAAATG GCGACAAACA CCATCCTGAG TGCCCCCAAA GAGTTAACTG
  GTCCAGATGC CTTTGTAATA CCTTGAATAT CATTTTAAAT GAAAAGCCTA AGACTATTTC
  TTGCCCCTGT TTGGTTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320863278	CHEV_3_105617523	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239666614					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105721921 () rs orientation: forward

Symbol	Name	Function Class
Gm5547	predicted gene 5547	962 bp upstream
Rr582787	regulatory region 582787	470 bp proximal
Rr582788	regulatory region 582788	985 bp proximal
Rr582789	regulatory region 582789	1528 bp proximal
Tssr31084	transcription start site region 31084	925 bp upstream