rs239672734 SNP Detail

Summary

• ID
  rs239672734
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4642010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTCAAGT CAGACTTTCT
  ATCTGCATCA GCCCCAACAG GGGTCAGTGA AGCCTGGGGT CATCTGATCT ACACATATCT
  CTCACATTTC AATTGAAATC ATAGGGATAC TAATGTTTGA AAACATCCAT TTATTTATGG
  GATTTTTAAA AAACAATTTT TATATAGCCT AGACTGACCT CAAATTCACA ATCCTTCTCA
  S
  CAGTCAGACT GATGCGACTC GTTCTCTGTG TGCAGGGGTT ACAGGCACGC ACCAGTTTAC
  GTTATGAGTT TTGCATCTCA GTACACTTCC TTCCATGGAA ACCTTACACT CCCATTTTGC
  CCATTAGGGA CCATCATTTC CTCATCCTCA ACCTTAAGAA AGCTTTTTTT TTGTCCAGGG
  GGTGCTGTTG CCTCTGTCAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384997208	MGP_WTSI_12_4598816	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239672734					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384997208	MGP_WTSI_12_4598816	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4642010 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4378	CpG island 4378	563 bp proximal
Gm3625	predicted gene 3625	within coordinates
Itsn2	intersectin 2	782 bp upstream
Rr256467	regulatory region 256467	within coordinates
Rr265387	regulatory region 265387	190 bp proximal
Tssr3767	transcription start site region 3767	1788 bp upstream
Tssr112557	transcription start site region 112557	619 bp upstream
Tssr112558	transcription start site region 112558	640 bp upstream
Tssr112559	transcription start site region 112559	783 bp upstream
Tssr112560	transcription start site region 112560	890 bp upstream
Tssr112561	transcription start site region 112561	982 bp upstream
Tssr112562	transcription start site region 112562	1126 bp upstream
Tssr112563	transcription start site region 112563	1850 bp upstream
Tssr115637	transcription start site region 115637	501 bp downstream
Tssr115638	transcription start site region 115638	1676 bp downstream
Tssr115639	transcription start site region 115639	1692 bp downstream
Tssr115640	transcription start site region 115640	1727 bp downstream
Tssr115641	transcription start site region 115641	1766 bp downstream
Tssr115642	transcription start site region 115642	1782 bp downstream