rs239677135 SNP Detail

Summary

• ID
  rs239677135
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:66079947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCTCCGCC CGGGCCCCGG
  TCCGCTTCGG CCTCCAGTGA CCACCCAACA TCTGACTTGT GGGCAAATCA TCCCCTTCCG
  TGATCAGCTC TGAGCCCGGT CGGGCACCAC TTGCCCTGGA CACACGACCC GTCGCGTCAT
  AAAGAGCCAT TGGAACAGTT TATGCTGTTG GCTGTGGTCC CAAGGAAGCA CTTCAAAGTC
  Y
  CTGGGTAGTC CCACCATAAA GTGACTCTGA CCTCCAGATG CAAGAAACAT CAGCGAGAAA
  CCGGGATGAG GGGAGGAAAG GGTTAACTTG TCCCTTCTAA TACCCAGGCT TCAAATCGCT
  TCCTCCCAAC ACTTCACTTT ACTCTGCATG CATTCTTTTC TGTATGCAGC AAAGGATGAC
  TCAAGGATGA TTCGAGAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398785443	MGP_WTSI_17_66122292	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239677135					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398785443	MGP_WTSI_17_66122292	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:66079947 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9418	CpG island 9418	within coordinates
Rab31	RAB31, member RAS oncogene family	200 bp upstream
Rr529807	regulatory region 529807	323 bp distal
Rr529808	regulatory region 529808	399 bp distal
Rr529809	regulatory region 529809	within coordinates
Rr529810	regulatory region 529810	625 bp proximal
Rr529811	regulatory region 529811	730 bp proximal
Rr529812	regulatory region 529812	935 bp proximal
Tssr149074	transcription start site region 149074	302 bp upstream
Tssr149075	transcription start site region 149075	276 bp upstream
Tssr149076	transcription start site region 149076	257 bp upstream