rs239680367 SNP Detail

Summary

• ID
  rs239680367
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:59024308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATAGCTTC TCTGTCAGGG
  TGGGAAGTTC AGGATTGTGT ATCACTCTTC TATTGATAGT GGTGATAGTC AAGAAAACTT
  CTTGGCTACA TGACATTCTT CTGCTGTTTT GAAGAAGCTC AGGTGAGATA CTTAAATATT
  CATCCCCATC TAGAATCAAA GAGCCCACAG AGGAGCTGTG CCAGTATTTG TATTAACAGT
  R
  CCCCATCATT GATGGACTAT ACAAAGTTAA AGCTCATTTT AAGACACATT TAATACCAAA
  CTCTGATTTC TTCACAAAGA CATGTTGGGA GAAAGGGGGT GCTCTTATAA GGGAAAAATC
  TCAACAGTAC TACAAAAGTA GCTAACTTTT TTTTTCTAAG ATTTATTTAA TTATTATATG
  TGAGTACACT GTAGCTGTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324055327	CHEV_12_60078509	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239680367					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:59024308 () rs orientation: forward

Symbol	Name	Function Class
Rr256937	regulatory region 256937	108 bp distal
Sec23a	SEC23 homolog A, COPII coat complex component	within coordinates
Tssr116440	transcription start site region 116440	1164 bp upstream