rs239683223 SNP Detail

Summary

• ID
  rs239683223
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46249548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCTTGCT GGTCTGCAGA
  GAGATCAACA CCCTTCAAAC CAGCTGCCTT GTTGGCTGCG GCTCACTTGG TCCGCCTCCT
  GATGCCTGCA GTTGTCATGG AAACCAAAGT AGGTCTGCTT CTGTCTGCCA CTGGGTCCCT
  GGGCTAGGGC AGCTATGGGC CAAAGCCACC TCAGTAAGGG CTGGCCGGAG GGGGGTGGGG
  T
  GGGGGGAAGA GGGGGAGGGG CCTGTGAGTC CTCTGAGCCT GTTTTCTCTT GAACTCTCCT
  GGGGCCTCTT TTCTGCCTCC AAACACAAGG TCAGATCACC TGCTGTCAGA CAACTGGAAT
  CAAAACAGCC CTGTCAGAAA AGGGCCTGAA CAAGTTGACT TTTCAAACAC ATACAAAATT
  CTTTCCTGGA AAAAAAAAAA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	CE/J	CZECHII/EiJ	FVB/NJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SWR/J	WSB/EiJ
ss377453332	MGP_WTSI_9_46146333	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	CE/J	CZECHII/EiJ	FVB/NJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SWR/J	WSB/EiJ
rs239683223					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377453332	MGP_WTSI_9_46146333	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46249548 () rs orientation: forward

Symbol	Name	Function Class
Rr383308	regulatory region 383308	within coordinates
Rr678124	regulatory region 678124	309 bp distal
Rr678125	regulatory region 678125	within coordinates