rs239696529 SNP Detail

Summary

• ID
  rs239696529
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:86585554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTCCCCAG TGTGGAGAGG
  CTGGTGAGAG CTGTCAACAT CACTCATGGC CCTCTGAATG AATGAGGGCC TGGGGGGTCC
  CCACTCAGCA CAGCTAGGCT GGGGTCAGAA AGATTGTAGC TACCCTGTGA GCTTGTTGAT
  CTGGGGCTTT GAACTTTCTT AGGTGGCAGG CTTCAGGCAA CAGGTTCTGC TTAAATGCAC
  K
  TGAGACTTTC TCTAGAGGGA CAGAGACCAC AGTGCCTCCT TCTCAGCTGT GGGCATGGGT
  GTGGGCTGCT GAGGAGGGCG ATTTATCCTG TGGCCAAGCA GCCCTATAGC ACAGAGCAGA
  GCTAACTGGC CAGCAGTAGC CAAACCTTGA GCCCACTTGG AACACAAAGC CCTCCACTCC
  TGCACTTTGA TTGGAATCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369088634	MGP_WTSI_6_86558566	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239696529					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369088634	MGP_WTSI_6_86558566	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86585554 () rs orientation: forward

Symbol	Name	Function Class
Gm67306	predicted gene, 67306	870 bp upstream
Gm67317	predicted gene, 67317	433 bp downstream
Rr150658	regulatory region 150658	within coordinates
Rr368114	regulatory region 368114	765 bp downstream
Tssr1919	transcription start site region 1919	786 bp downstream
Tssr57493	transcription start site region 57493	726 bp downstream
Tssr57494	transcription start site region 57494	990 bp upstream
Tssr61819	transcription start site region 61819	1016 bp upstream
Tssr61820	transcription start site region 61820	934 bp upstream
Tssr61821	transcription start site region 61821	918 bp upstream
Tssr61822	transcription start site region 61822	894 bp upstream
Tssr61823	transcription start site region 61823	851 bp upstream
Tssr61824	transcription start site region 61824	743 bp downstream
Tssr61825	transcription start site region 61825	769 bp downstream