rs239697135 SNP Detail

Summary

• ID
  rs239697135
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:4298925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTTGTTA AATTGAGTGA
  CCTGTCCTTC AAGAGAAATC GGAAGGAGGG TGGGGGTGAT TCCTCAGCCT CCTCACCAAC
  AGAGGAAGAG CAGGAGCAGA GGGAAATCAG TGCCTGCAGC GATGAGGGCA CTGCCCAAGA
  AGGGAAGGCT CCTGCCACCC CTGAGAGCCA AGAGCCCCAG TTCACGGGTA GTGCTGCCTC
  W
  AAGGAAGGAG ACACAGAACA GGAGGCAGGG CCCCGGGCTG CAGAGCCATC CACTCCCTCA
  GAGAGTGGCC CCACACCTGC CAGTGCTGAG CAGAATGAGT AGCTGGGTAG GGGCAGGTGG
  GTGATCTCTA AACTGCAAAA CTGTGCTGTT CTTGTGAGGT CACTGCCTGC ACCTTGTGCC
  CTGGCTGTCT TCCTGTGCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324213503	CHEV_13_4248172	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239697135					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:4298925 () rs orientation: forward

Symbol	Name	Function Class
Akr1c19	aldo-keto reductase family 1, member C19	565 bp downstream
Gm61344	predicted gene, 61344	within coordinates
Marcksl1-ps4	MARCKS-like 1, pseudogene 4	within coordinates
Rr283540	regulatory region 283540	125 bp distal
Tssr118223	transcription start site region 118223	779 bp upstream