rs239703190 SNP Detail

Summary

• ID
  rs239703190
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190957261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGGGTCAC GTAGGTGCAC
  CCGTGGGGTC AGTCGGCAGA GCCCGGGGCA GCTGAGCCCG ACTGTGTGGA CAGCCCTTGC
  ACTGCAGGTC CAGAGCGATG TCAGTCAGAG AGGTGTGGCA TCTGGGTCTG TGGGCCACAC
  CTCTTTCAAC CGAAGCAAGT TCTAGAAAGT CCCCTGGTGG GTGAAACTTA TCAGAGTTCA
  M
  GTTTAGGTAG TGTTGGGTTG TAATGAAAAC TTGTGAAGAG CGAGAGTAAA CGTGGTGGCT
  GACCCTGCGA CCAGCTGAGG AGACCCTGGC CCGGGGTCTT ACTAAGGGGC TTCCGATCTC
  TGTATCTTCC CTGCTGAACT CAAGATGGTT TCCTGCATGT CTGTGAGGAG TGGAGGAGGA
  CATGTCTGTC ATCCAGAGTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352828709	MGP_WTSI_1_193048943	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239703190					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352828709	MGP_WTSI_1_193048943	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190957261 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1220	CpG island 1220	43 bp distal
D730003I15Rik	RIKEN cDNA D730003I15 gene	within coordinates
Gm70871	predicted gene, 70871	95 bp upstream
Rr29193	regulatory region 29193	within coordinates
Rr396715	regulatory region 396715	611 bp downstream
Rr396716	regulatory region 396716	1578 bp upstream
Tssr372	transcription start site region 372	208 bp upstream
Tssr10744	transcription start site region 10744	603 bp downstream
Tssr10745	transcription start site region 10745	543 bp downstream
Tssr10746	transcription start site region 10746	2 bp downstream
Tssr10747	transcription start site region 10747	376 bp upstream
Tssr15770	transcription start site region 15770	95 bp upstream
Tssr15771	transcription start site region 15771	77 bp upstream
Tssr15772	transcription start site region 15772	195 bp downstream
Tssr15773	transcription start site region 15773	208 bp downstream