rs239708444 SNP Detail

Summary

• ID
  rs239708444
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110677440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACTTATG AAGGATAGAT
  TCATGAATAA GATCAAGCTT GCCAAGTTCT CCAATGAATT TGATGTTCCC CAACATCTTG
  ATCTTAGCAA TGGCTCTCTG TTCCTCCTCC TCAGGAAGGA GGGGATTTTC ACGCTTATCA
  TAGACTGAGG GAAGGGAGGC AAACAAAATA AAGAACACTT AGGCCATGAA AGGTGTGTAC
  K
  CACACATAAA ACTACCCAAG AGCAAATTTA AATTCTTACC ATCAACATTT CTGGTTCGGT
  TTTCAAATTC ATCTTGCAAT TTGGAAATCA AGAGGCGTCT GAATGTCTAT TTGAAAACAA
  AAAGTATTTG TAAAAAGAAA AAAAATTTCA AATTAATTTC AAAACAAAGA AAAAAAACTG
  TCACTCACTG TGCTTTGCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322401259	CHEV_7_118221747	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239708444					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110677440 () rs orientation: forward

Symbol	Name	Function Class
Eif4g2	eukaryotic translation initiation factor 4, gamma 2	within coordinates
Rr159269	regulatory region 159269	1440 bp distal
Rr166519	regulatory region 166519	1560 bp proximal
Rr166520	regulatory region 166520	1960 bp proximal
Rr168547	regulatory region 168547	1840 bp distal
Tssr68538	transcription start site region 68538	1942 bp upstream
Tssr74290	transcription start site region 74290	1835 bp upstream
Tssr74291	transcription start site region 74291	94 bp upstream
Tssr74292	transcription start site region 74292	271 bp downstream
Tssr74293	transcription start site region 74293	323 bp downstream
Tssr74294	transcription start site region 74294	1083 bp downstream