rs239708786 SNP Detail

Summary

• ID
  rs239708786
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50320553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAATATTT AGATAAAACT
  TACAAACTCA CATTTTAATG AAGTACATAC AGATATGTTA AAATAAAGAT GATTGATTGG
  ACTGAGTTCT GAATTAATAA CTAAAATCTT CCTTTCCCAG TGCATGACTA CCATGTAATT
  CTCACTACAC AGTAAGAATT ACATGCTATG AAATTCAGGG TTCAAGTCTT ACCAGAGAGG
  R
  AAGACAAATC AAGTTCTCCC AGCATCCTGC ACAGCATTAG TGAGACATTT AACTACCTCG
  TTTGTTTTGT TTTGTTTTGT TTTGTTTTGT TTTGTTTTGT TTTGTTTTAT CTTGTACAGC
  CCAAATAGAA AACATACCGG ATACTTATCG TTGCAAAATT CCCACTTGTT GAAAACTACT
  GACCCTCATT ACCATTGTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357906207	MGP_WTSI_3_50170026	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239708786					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357906207	MGP_WTSI_3_50170026	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50320553 () rs orientation: forward

Symbol	Name	Function Class
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	within coordinates
Tssr33101	transcription start site region 33101	308 bp downstream
Tssr33102	transcription start site region 33102	329 bp downstream
Tssr33103	transcription start site region 33103	413 bp downstream
Tssr33104	transcription start site region 33104	425 bp downstream
Tssr33105	transcription start site region 33105	486 bp downstream
Tssr33106	transcription start site region 33106	530 bp downstream
Tssr33107	transcription start site region 33107	555 bp downstream
Tssr33108	transcription start site region 33108	619 bp downstream
Tssr33109	transcription start site region 33109	684 bp downstream
Tssr33110	transcription start site region 33110	738 bp downstream
Tssr33111	transcription start site region 33111	771 bp downstream
Tssr33112	transcription start site region 33112	810 bp downstream
Tssr33113	transcription start site region 33113	856 bp downstream
Tssr33114	transcription start site region 33114	880 bp downstream
Tssr33115	transcription start site region 33115	939 bp downstream
Tssr33116	transcription start site region 33116	1344 bp downstream
Tssr33117	transcription start site region 33117	1574 bp downstream
Tssr33118	transcription start site region 33118	1601 bp downstream
Tssr33119	transcription start site region 33119	1627 bp downstream