rs239711294 SNP Detail

Summary

• ID
  rs239711294
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:88823650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCCGTGA GAGCGTCCCT
  TGTTCCCGTG CCCAATAGGA GGACGGAGCG GGAGGGAGGC GGGGGTGCGG TGCGTGCCGC
  GGATCCCCGG GCGCGCACGC GGGGCGCTCG CGGACAGACC GACGCGGGCG CGCGGCCGCC
  GAGGGTCCCG CGCGCGGCGC CACGTACCTG ACTGTAACCC CGCGCCGGGC CCGCGGCGGC
  Y
  GCCAGCGATC GCGGAAACAG CGGGGCGCGC AGGGCCGAGT AGGACGCGGC GGCGGCCGCG
  GCGGCGGAGG GACGGGCAGG GATGGGACCC GCCAGCCTCC CGGCGGCCGC AGGCCCGAGC
  TGCAGGCCCC GCGTCTGCGA AGCGGCGGCC GCGGCGGCCC CGAGGAGTAG CAGCAGGCGG
  CGGCGGCCAG AGACGCCCGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss365796645	MGP_WTSI_5_89104816	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	C	T	T	T	T	C	T	T	C	T	T	C	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs239711294					SNP	T	T	T	T	T	T	C	T	T	T	T	C	T	T	C	T	T	C	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365796645	MGP_WTSI_5_89104816	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:88823650 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16030	CpG island 16030	within coordinates
Gm71600	predicted gene, 71600	432 bp upstream
Grsf1	G-rich RNA sequence binding factor 1	Coding-Synonymous
Rr614150	regulatory region 614150	136 bp distal
Rr614151	regulatory region 614151	within coordinates
Rr614152	regulatory region 614152	166 bp proximal
Rr614153	regulatory region 614153	227 bp proximal
Rr614154	regulatory region 614154	370 bp proximal
Rr614155	regulatory region 614155	443 bp proximal
Tssr51689	transcription start site region 51689	564 bp upstream
Tssr51690	transcription start site region 51690	228 bp upstream
Tssr51691	transcription start site region 51691	199 bp upstream
Tssr51692	transcription start site region 51692	136 bp upstream
Tssr51693	transcription start site region 51693	320 bp downstream
Tssr51694	transcription start site region 51694	344 bp downstream
Tssr51695	transcription start site region 51695	401 bp downstream
Tssr51696	transcription start site region 51696	435 bp downstream