rs239712985 SNP Detail

Summary

• ID
  rs239712985
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126619050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGGGCTG GGCCCTCTTC
  CCCGTCACCA GCCTGAAGGG GAACCACTGC TCCGTTTTCT TGTTTTTCCC CTGTACTTTC
  TGTCAGGACC TCTGTGGTAG GGTCCTCTTG GGTGGGGGGC TCTGCCTGAA GGGGTGGTTT
  AGGAGGAGGC TGGGAAGTTG GCTGAGGGTC TGACTGGGTG TTTATCTGAA AAGCAGGCTC
  Y
  GAGGTTGGCT CAGGAGGGGC TGTAGACTGC GGCTCAGACC CTTCCTCTGC TGCAGTCTCT
  CTGTTCACAT CTGGTTTGGA TGCTGGCTCT TGGCGTGCCT CGCTGGGGCT GGGGCTGGGG
  CTGGCCTTGG AGCCTTCTTC TGGGTTTAAA CTGAGGTCTG TGGCCTGGAC TGTTTCTGGG
  GTTTCAACTG GGGTCTCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373079205	MGP_WTSI_7_134163392	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239712985					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373079205	MGP_WTSI_7_134163392	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126619050 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19726	CpG island 19726	1015 bp proximal
Gm42742	predicted gene 42742	within coordinates
Gm53372	predicted gene, 53372	1339 bp upstream
Prrt2	proline-rich transmembrane protein 2	within coordinates
Rr655670	regulatory region 655670	479 bp proximal
Rr655671	regulatory region 655671	1249 bp proximal
Rr655672	regulatory region 655672	1440 bp proximal
Rr655673	regulatory region 655673	1520 bp proximal
Tssr69153	transcription start site region 69153	1473 bp upstream
Tssr69154	transcription start site region 69154	1504 bp upstream
Tssr69155	transcription start site region 69155	1560 bp upstream
Tssr74886	transcription start site region 74886	1355 bp upstream
Tssr74887	transcription start site region 74887	1301 bp upstream
Tssr74888	transcription start site region 74888	1282 bp upstream
Tssr74889	transcription start site region 74889	952 bp upstream
Tssr74890	transcription start site region 74890	380 bp upstream
Tssr74891	transcription start site region 74891	180 bp upstream
Tssr74892	transcription start site region 74892	75 bp upstream
Tssr74893	transcription start site region 74893	6 bp downstream
Tssr74894	transcription start site region 74894	204 bp downstream
Tssr74895	transcription start site region 74895	249 bp downstream
Tssr74896	transcription start site region 74896	430 bp downstream
Tssr74897	transcription start site region 74897	443 bp downstream
Tssr74898	transcription start site region 74898	1168 bp downstream
Tssr74899	transcription start site region 74899	1199 bp downstream
Tssr74900	transcription start site region 74900	1263 bp downstream
Tssr74901	transcription start site region 74901	1288 bp downstream
Tssr74902	transcription start site region 74902	1327 bp downstream
Tssr74903	transcription start site region 74903	1705 bp downstream
Tssr74904	transcription start site region 74904	1735 bp downstream