TAGTGGCGCT GGGGACCGCG CGGCTGCGGG CTGCGCTGCC CGGGGGGCGT TGCAGCAGGG CGGTGGGGCC AGGGGAGTCC GCGATTCCCC GGGGCTCGGG TCAGGGTCAG CAGTGGGGAC CGGTGCTGGC GGGAGAAGGC AGGGACCTCA GAGCGGAGGG GTTCCGGAAG GGGGGGCTCC GGGAACTTAG CAGCTGGACA Y CGGAGAGGTC CCCAGGGCTG TGCGCAGGGT CGGGGGGGGG GGGTGACTGG AAAGGAGGCG TTGGAACTCT CTGGGGGCCG GCGGACTGCA CGCCAGGAAG ACTCCGGAAC CAGCAATTAG GAAACCATCA GAACGAGGGC AGGGGCATAT GAAATGTGGA CCACAGGATG GGGGAGACGC GCAAACTGGC TGCCTCAGGC Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss377446852 | MGP_WTSI_9_45821415 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | C | C | C | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | C | T | T | T | T | C | C | T | C | T | C | T | T | T | T | T | T | C | T | T | T | T | T | T | T | C | T | T | T |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
||||
rs239717424 | SNP | C | C | C | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | C | T | T | T | T | C | C | T | C | T | C | T | T | T | T | T | T | C | T | T | T | T | T | T | T | C | T | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss377446852 | MGP_WTSI_9_45821415 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | C/T |
Location: Chr9:45924630 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi21700 | CpG island 21700 | within coordinates | ||||||
Pafah1b2 | platelet-activating factor acetylhydrolase, isoform 1b, subunit 2 | 642 bp upstream | ||||||
Rr401349 | regulatory region 401349 | 529 bp downstream | ||||||
Rr678027 | regulatory region 678027 | 502 bp distal | ||||||
Rr678028 | regulatory region 678028 | 552 bp distal | ||||||
Rr678029 | regulatory region 678029 | 1227 bp proximal | ||||||
Sik3 | SIK family kinase 3 | within coordinates | ||||||
Tssr84822 | transcription start site region 84822 | 511 bp downstream | ||||||
Tssr84823 | transcription start site region 84823 | 472 bp downstream | ||||||
Tssr89308 | transcription start site region 89308 | 639 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
||
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support. |
last database update 12/17/2024 MGI 6.24 |
![]() |
|