rs239719788 SNP Detail

Summary

• ID
  rs239719788
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:89362151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTC CTCAGGTCTC CATTGAAGGG
  T
  CAGCCAAGGC TCCACCTGCC CTGAG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322766253	CHEV_8_91159422	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239719788					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:89362151 () rs orientation: forward

Symbol	Name	Function Class
Rr187078	regulatory region 187078	within coordinates
Rr382438	regulatory region 382438	within coordinates
Snx20	sorting nexin 20	within coordinates
Tssr82357	transcription start site region 82357	453 bp downstream
Tssr82358	transcription start site region 82358	536 bp downstream
Tssr82359	transcription start site region 82359	594 bp downstream
Tssr82360	transcription start site region 82360	629 bp downstream