rs239720164 SNP Detail

Summary

• ID
  rs239720164
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:27752079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGATC CACTTCTCAC TGTGGTCTGC
  R
  AAGTGTCCGT TGGCAGACCA GGTAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322535791	CHEV_8_28372523	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239720164					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:27752079 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20220	CpG island 20220	424 bp distal
Eif4ebp1	eukaryotic translation initiation factor 4E binding protein 1	within coordinates
Rr186444	regulatory region 186444	within coordinates
Rr186445	regulatory region 186445	1121 bp proximal
Tssr76776	transcription start site region 76776	1719 bp downstream
Tssr76777	transcription start site region 76777	1681 bp downstream
Tssr76778	transcription start site region 76778	1633 bp downstream
Tssr76779	transcription start site region 76779	1589 bp downstream
Tssr76780	transcription start site region 76780	1542 bp downstream
Tssr76781	transcription start site region 76781	618 bp downstream
Tssr76782	transcription start site region 76782	695 bp upstream