rs239721799 SNP Detail

Summary

• ID
  rs239721799
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:99773778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTCCAGC TAGCTCACTC
  GCTCATCTTC CCACCATGAC TGTGCTCGAG CCATAGCGCC TCTCCCGGCC TTCCAAGAGG
  ACCCACACTT CTTCCTGTAG GTGGCAACAG TGACACCTGT TTGACCAGTG AGGCTGAGCC
  AGGGACTGCA AGAGGGAGGA GGCAGACAAC TCGGAGAGGA GCTGGGAGGC AGAGCTGCGG
  K
  CTTGCTTGCT CACTGTGTAA AAGGTGTGAG GGCTCGGGAA GGCTGGGGGC TACCGCTGGG
  GAGCCGGGAA GCAAAGAGCG GCTCAAGCCG GGAGGGATGG AGCCCAGGGG GCTATGCAGC
  ACCCCTGTCA GATTCCCTGC TCCGGGTCTT TCAGACTGGC CAGATCCTGA TTCCATCTTC
  CAGGCAACTC TTGAGGGAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss404170225	MGP_WTSI_X_97925511	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239721799					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404170225	MGP_WTSI_X_97925511	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:99773778 () rs orientation: forward

Symbol	Name	Function Class
Gdpd2	glycerophosphodiester phosphodiesterase domain containing 2	within coordinates
Gm52438	predicted gene, 52438	1011 bp upstream
Tssr161618	transcription start site region 161618	349 bp downstream
Tssr161619	transcription start site region 161619	326 bp downstream
Tssr161620	transcription start site region 161620	209 bp downstream
Tssr161621	transcription start site region 161621	178 bp downstream
Tssr161622	transcription start site region 161622	50 bp downstream
Tssr161623	transcription start site region 161623	31 bp downstream
Tssr161624	transcription start site region 161624	5 bp downstream
Tssr161625	transcription start site region 161625	6 bp upstream