rs239741400 SNP Detail

Summary

• ID
  rs239741400
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144940562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATTCATGT AAATGTCGGG
  CAGGTATGGC AGCCTGCCTG TAACCTGAGC ACTCCATAGG CAGACAGAGA TCCCTGAAGC
  AAGTTAGACT AGAAAATGTG CAAGCTCTGG GTACAGATGA GAGCCCTGCC TCAGTAACTG
  AGAGTGATCA AACACACCCA AAGCCAACCT CTGGCCTCCA CACACTGGCA CACACATACA
  Y
  GCAAACATGG ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACTGAAGGAG
  GGAGATTCTG GACTGCCCAT CCTTTAGGAA TGTGTTATAG GTCAGCACTC AAATTGTTCC
  CTGCTCCCCC TCCTCTGATT GCAGAGCCCT AAGCTGGTCT AAGCTAGTAC AGCCATTGTT
  CACATCCACG GTGTGGGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ	RIIIS/J	SPRET/EiJ
ss363595757	MGP_WTSI_4_144803895	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ	RIIIS/J	SPRET/EiJ
rs239741400					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363595757	MGP_WTSI_4_144803895	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144940562 () rs orientation: forward

Symbol	Name	Function Class
Rr87265	regulatory region 87265	239 bp proximal
Rr103536	regulatory region 103536	763 bp distal
Rr103537	regulatory region 103537	within coordinates
Tnfrsf1b	tumor necrosis factor receptor superfamily, member 1b	within coordinates
Tssr40194	transcription start site region 40194	22 bp downstream
Tssr40195	transcription start site region 40195	289 bp upstream
Tssr44484	transcription start site region 44484	1207 bp upstream
Tssr44485	transcription start site region 44485	1141 bp upstream
Tssr44486	transcription start site region 44486	319 bp upstream
Tssr44487	transcription start site region 44487	264 bp upstream
Tssr44488	transcription start site region 44488	147 bp upstream
Tssr44489	transcription start site region 44489	71 bp upstream
Tssr44490	transcription start site region 44490	206 bp downstream
Tssr44491	transcription start site region 44491	373 bp downstream
Tssr44492	transcription start site region 44492	598 bp downstream
Tssr44493	transcription start site region 44493	759 bp downstream
Tssr44494	transcription start site region 44494	993 bp downstream
Tssr44495	transcription start site region 44495	1054 bp downstream
Tssr44496	transcription start site region 44496	1123 bp downstream
Tssr44497	transcription start site region 44497	1246 bp downstream
Tssr44498	transcription start site region 44498	1371 bp downstream
Tssr44499	transcription start site region 44499	1414 bp downstream
Tssr44500	transcription start site region 44500	1502 bp downstream
Tssr44501	transcription start site region 44501	1562 bp downstream
Tssr44502	transcription start site region 44502	1658 bp downstream
Tssr44503	transcription start site region 44503	1774 bp downstream
Tssr44504	transcription start site region 44504	1840 bp downstream