rs239745704 SNP Detail

Summary

• ID
  rs239745704
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:59935225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAAACCT GGAACAAAAT
  AACCCCTTCC CCACCACCCG AACGAAATGC GTACACGAAA TAGCAAATAG ATCACTGCAG
  AAATCACAAA CTCAACAGCC TAAACGCGCA CTGGACAGAG CTGTCCCGCG GCCAGGGGCG
  GCAAGGCGGG AAACACACGC ACACCTGGCT ATAAATTAAC ATTGGCTTTA GCTGTCGCGC
  Y
  AATTGGCGCG GCCAGCACCC CCCCCCCAAA AAAAAGCCAG AGGAAAACAG AAGCAATACG
  ACTGGGGGTG GAGGCATTGC AGTTCTTGGG GGCGGGCAAC CTCACTCAGT TCTCGATTAA
  TAGCAAACTA ACAAGACATT TTCAACTGCA ACAGAAGAAC CTAGGAATCC GGGAAGAGGA
  AGGGGCCGCG GTTTCTCCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss403581828	MGP_WTSI_X_58144794	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs239745704					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403581828	MGP_WTSI_X_58144794	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:59935225 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22744	CpG island 22744	183 bp proximal
Rr691596	regulatory region 691596	398 bp distal
Rr691597	regulatory region 691597	3 bp proximal
Rr691598	regulatory region 691598	570 bp proximal
Rr691599	regulatory region 691599	1801 bp proximal
Sox3	SRY (sex determining region Y)-box 3	within coordinates
Tssr5624	transcription start site region 5624	899 bp downstream
Tssr163494	transcription start site region 163494	83 bp downstream
Tssr163495	transcription start site region 163495	406 bp downstream
Tssr163496	transcription start site region 163496	1057 bp downstream
Tssr163497	transcription start site region 163497	1818 bp downstream