rs239746990 SNP Detail

Summary

• ID
  rs239746990
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:127129667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGCGGAA GGGGTGGGCG
  GGGGGAGGGG ATATCACTTT AAAAGGGTGA GTATGAGTTT GGGGCGCCGT CTCCCCTCCC
  TCTATTTGCA TAGCCAATAG CTCTGGGGCT CCTGCTACTG CGCGCTGATT GTTACCGGGC
  AGATTACTTT TTTTTTTTAA AGTAGGAAGC CTTCTCCGCT ACATCAAAAG GAAGCCCGGG
  R
  AGGGCGGAGG GAGAGCGGGG ACCCGGGCGG GCTAGGCCCG CACAGGGGCC TGGGCTCCTC
  GGACCCTATC AATGGCAGCG GGAATTAGTA TCCAATCTAC TGCATGTAAA GAAAGGGGAG
  GGAAGGGGCG GGCGAGGAAA ATGTGTAATT GCAATGGAAG CCATTAGCTT TCGGAGGTGG
  GTGGGGGAGA ACTCATTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369997165	MGP_WTSI_6_127102722	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239746990					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369997165	MGP_WTSI_6_127102722	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:127129667 () rs orientation: forward

Symbol	Name	Function Class
9330179D12Rik	RIKEN cDNA 9330179D12 gene	within coordinates
Ccnd2	cyclin D2	511 bp upstream
Cpgi18034	CpG island 18034	1624 bp distal
Cpgi18035	CpG island 18035	235 bp distal
Cpgi18036	CpG island 18036	56 bp proximal
Cpgi18037	CpG island 18037	575 bp proximal
Cpgi18038	CpG island 18038	1354 bp proximal
Gm56941	predicted gene, 56941	339 bp downstream
Rr399942	regulatory region 399942	within coordinates
Tssr59022	transcription start site region 59022	130 bp downstream
Tssr59023	transcription start site region 59023	555 bp upstream
Tssr59024	transcription start site region 59024	938 bp upstream
Tssr63375	transcription start site region 63375	1690 bp upstream
Tssr63376	transcription start site region 63376	1665 bp upstream
Tssr63377	transcription start site region 63377	1649 bp upstream
Tssr63378	transcription start site region 63378	230 bp upstream