rs239751956 SNP Detail

Summary

• ID
  rs239751956
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6096096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATCAGTAA TGACAATTCT
  GAAAGCCCCT GTGTTATATT TTAACAACAC AGTCACCTCC GGTTCTGTAT TCACTGTCCG
  TGTTGTGACT CCCACAGTAT AAATTCCTCC AGTTGATCTT CATGAATTCT TATATTTGAT
  CCCCCCCCCC CTTAGGCCTC TGAATTCCGA GTGAGTCCGA GTTAAAAATG GGAGGAGCAC
  M
  CTCTAGCTGA TAAACCTGGG TAATGAGGTG TCCGCTTTCA GTTTCCATTC TGTACGCGAC
  TATACTGCTT GTGTGAGCCC TAACAGACAG AATCAGCTCA GAACAAAGGG TCTGGCTATC
  TCCCAGGGAT GAACACGCAC GCCGACTGAG CTTTTGGGGT GTTGAAAAGT CAACGCCTTC
  GCACAGAACT CTCCACCCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401668096	MGP_WTSI_19_6046066	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239751956					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401668096	MGP_WTSI_19_6046066	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6096096 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10491	CpG island 10491	148 bp proximal
D530017H19Rik	RIKEN cDNA D530017H19 gene	within coordinates
Gm8034	predicted gene 8034	1244 bp upstream
Gm59262	predicted gene, 59262	36 bp upstream
Rr370438	regulatory region 370438	242 bp upstream
Rr405816	regulatory region 405816	1585 bp downstream
Rr405817	regulatory region 405817	42 bp downstream
Rr543275	regulatory region 543275	1626 bp distal
Rr543276	regulatory region 543276	1762 bp distal
Rr543277	regulatory region 543277	within coordinates
Rr543278	regulatory region 543278	within coordinates
Rr543279	regulatory region 543279	607 bp proximal
Rr543280	regulatory region 543280	946 bp proximal
Rr543281	regulatory region 543281	1049 bp proximal
Rr543282	regulatory region 543282	1242 bp proximal
Rr543283	regulatory region 543283	1305 bp proximal
Rr543284	regulatory region 543284	1353 bp proximal
Syvn1	synovial apoptosis inhibitor 1, synoviolin	510 bp upstream
Tssr154538	transcription start site region 154538	38 bp upstream
Tssr154539	transcription start site region 154539	563 bp upstream
Tssr154540	transcription start site region 154540	955 bp upstream
Tssr154541	transcription start site region 154541	989 bp upstream
Tssr154542	transcription start site region 154542	1015 bp upstream
Tssr157816	transcription start site region 157816	1165 bp upstream
Tssr157817	transcription start site region 157817	882 bp downstream
Tssr157818	transcription start site region 157818	1344 bp downstream