rs239753949 SNP Detail

Summary

• ID
  rs239753949
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115285099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGG TGGAGGGTCA GACACCCCAG
  M
  AGAGACCACT CCAATCTCCT GTCTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321654345	CHEV_5_115597049	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239753949					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115285099 () rs orientation: forward

Symbol	Name	Function Class
Mlec	malectin	within coordinates
Rr618145	regulatory region 618145	1127 bp distal
Rr618146	regulatory region 618146	353 bp proximal
Tssr48205	transcription start site region 48205	662 bp upstream
Tssr52756	transcription start site region 52756	801 bp downstream
Tssr52757	transcription start site region 52757	966 bp downstream
Tssr52758	transcription start site region 52758	1015 bp downstream