rs239762848 SNP Detail

Summary

• ID
  rs239762848
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53215409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCAAAAAC ATAGCAATCC
  TCTTGCCTCA GCCTCCAAAA TCCTGGATTA CAGGATTTTT TTTTTTTAGG ATTTTTTGAA
  TACTACAAAA TTCCACTGCA TATGTATTAC AGACCCCTGG TTTGAGATCA CCCTTCAAGA
  CCCTATTCAT ACTGAACACA CAAGCCCACA TTAGAAAAGA CAAACCAGCT AGTGGCCACC
  R
  TTAGCCTCTT CTGAATTGAG CCCGTCTGGC CCCGCCCAGG ACCGCAGAGG TTTCTAAGGA
  CCCGCCCACC GGTGCTAGTT TCCCAAAAAC CCGTGCGGCA GACTCCAGCC GCTCCAAGAT
  GGCGACTCCC ATGCATCGGC TCATAGCTCG AAGGAAAGCG TAAGTGAGAT GCTTGTGGGG
  TGTGCAGGAG GGCTGGGGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323672285	CHEV_11_53138084	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239762848					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53215409 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2860	CpG island 2860	9 bp proximal
Gm74485	predicted gene, 74485	within coordinates
Rr447001	regulatory region 447001	within coordinates
Rr447002	regulatory region 447002	53 bp proximal
Rr447003	regulatory region 447003	108 bp proximal
Tssr101382	transcription start site region 101382	92 bp upstream
Tssr107917	transcription start site region 107917	8 bp downstream
Zcchc10	zinc finger, CCHC domain containing 10	107 bp upstream