rs239769433 SNP Detail

Summary

• ID
  rs239769433
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92472638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTTCTCA TCTCAATCCC
  TTTGTTCTCT GCATTTAAAT TCCAGTTACA TTACTTCAGA CTCACTGAAC AGACTTTACT
  CAAAACCACC AACGCCCACA CTGTACTTAA TTAACTGCCT GGTAAATGTC TTATCCTCAA
  AGATCCAGAT CAGAGATCAC TTGATAGGAG AAGTCTACCT TAATACTTTC TATATTGTCT
  Y
  TTGGTCAAGT CAATTACCCT TTCCATCATA ATTCTCAAAG TTCTCATGTA CACACTATTT
  ATTCTAAATG TCTCTCACCA CGTCTGTTGA TTTTTATACA TTGTTAATGA CTATCTGCTA
  TATGGGGGAG GGGTGATAGC TTATTAATTT TGAATCCTTA GTGTCTTACT AGTTGATGCT
  ATTCAAAAGG ATGGAAAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365880967	MGP_WTSI_5_92753805	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239769433					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365880967	MGP_WTSI_5_92753805	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92472638 () rs orientation: forward

Symbol	Name	Function Class
Cxcl9	C-X-C motif chemokine ligand 9	within coordinates
Tssr47287	transcription start site region 47287	1788 bp downstream
Tssr47288	transcription start site region 47288	1000 bp downstream
Tssr47289	transcription start site region 47289	990 bp downstream
Tssr47290	transcription start site region 47290	975 bp downstream
Tssr47291	transcription start site region 47291	933 bp downstream
Tssr47292	transcription start site region 47292	338 bp upstream
Tssr47293	transcription start site region 47293	1986 bp upstream
Tssr51865	transcription start site region 51865	1953 bp upstream
Tssr51866	transcription start site region 51866	1673 bp upstream
Tssr51867	transcription start site region 51867	1071 bp upstream
Tssr51868	transcription start site region 51868	1025 bp upstream
Tssr51869	transcription start site region 51869	983 bp upstream
Tssr51870	transcription start site region 51870	933 bp upstream
Tssr51871	transcription start site region 51871	898 bp upstream
Tssr51872	transcription start site region 51872	333 bp downstream