rs239772393 SNP Detail

Summary

• ID
  rs239772393
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:7739833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCCCTGC TGAAGTAGAG
  TGGACCCTAG AGAGAACTGT GTCCTATACA TACGGGGTAG CAGTTATTCC TGGGGACAGG
  TGTGGAATGC CACCTCCCAC TGCCACCTGT TCTACACCTG GGAAGCGATC CATGTCCCCC
  CTGAACCCAG GACAGATGCT TCAGCAGCTG CACTGTAGTG TGTCCCCCCC CCCCCCCCCG
  M
  GCCATTTCCA GATCCATGAG TTAGATAGAG GCTTTCTCTG TCCAGCTTCT ATCTAAATGA
  ATCTGGCAAG TCAGGAAATG AGATTTCAGA AATCCTCACT GAGGGCTCAT GGGCCATGGC
  TGCCTCTAGC CTGGTGACAG CCAAGGCCCT GGCCAAGTCC TTCTAATGCC TGGCTCTCTG
  CTATAGGGAG GGAGGTCAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379348702	MGP_WTSI_10_7583867	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239772393					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379348702	MGP_WTSI_10_7583867	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:7739833 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1279	CpG island 1279	1417 bp distal
Rr216483	regulatory region 216483	1033 bp distal
Rr220418	regulatory region 220418	1833 bp distal
Rr223547	regulatory region 223547	301 bp distal
Rr223550	regulatory region 223550	161 bp proximal
Rr223552	regulatory region 223552	670 bp proximal
Rr384104	regulatory region 384104	618 bp upstream
Tssr92330	transcription start site region 92330	1966 bp downstream
Zc3h12d	zinc finger CCCH type containing 12D	within coordinates