rs239776539 SNP Detail

Summary

• ID
  rs239776539
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72808802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTCTAGAA AACCTCAAAG
  GCCAAAGTTA TTACTAACTT CAAATTCAAA TTTCAATAGC CTCCCAACTA TTTCACTTAA
  CCCTACTCAG AACAAAACTA GTGCAAAGTT GGAGTAGTCT GCAAAACGCC AACAATTCTG
  AATGATCAGG TTAAAAAATA ATAATAATAA AAATGTTCGT CCCTGCGTAT AAAAGAACAC
  S
  CTCCTTAAAT GATCAAATAC CCAAGATCTG GAAACTTGCT CCAGATTCAA AAACTCTAGA
  AACTAGAGCC ATCCTTGCCT CGGTAGGTGA TACTATCTGT GACCGATAGG CTGTGCTTGC
  AAATGTAGTG CAAAGAGCGA GTGAGTTTTC AAGTCCTGAT ACGAATTACT TAAACATCCA
  TTTTGGAGTC CCGTGCCCAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320344166	CHEV_2_72816515	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239776539					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72808802 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11763	CpG island 11763	40 bp proximal
D130067C23Rik	RIKEN cDNA D130067C23 gene	1471 bp upstream
Rr373352	regulatory region 373352	1437 bp upstream
Rr559063	regulatory region 559063	468 bp proximal
Rr559064	regulatory region 559064	1958 bp proximal
Sp3	trans-acting transcription factor 3	within coordinates
Sp3os	trans-acting transcription factor 3, opposite strand	974 bp upstream
Tssr18359	transcription start site region 18359	633 bp upstream
Tssr18360	transcription start site region 18360	688 bp upstream
Tssr18361	transcription start site region 18361	970 bp upstream
Tssr18362	transcription start site region 18362	1045 bp upstream
Tssr18363	transcription start site region 18363	1496 bp upstream
Tssr24523	transcription start site region 24523	530 bp downstream
Tssr24524	transcription start site region 24524	805 bp downstream
Tssr24525	transcription start site region 24525	1144 bp downstream
Tssr24526	transcription start site region 24526	1944 bp downstream