rs239779297 SNP Detail

Summary

• ID
  rs239779297
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:116899521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGCCCTGA TCTTACAAAG AGATGCTGAC
  TTAGTGTGCG TTCCCCCTTC CCGTCCCGCG CGGAGAGCTC GGTCACCCGG TCCCACGCAG
  GCCTCATGCC CGGCCCGAGC CATGTGCGGA GGGGCCAGGA GGCGGCCGCT CGGAGCCTGC
  R
  ACTCCGGTTA GACAAGAGGA CCAGCGGGGC GGCAGGACAC AGCGGGGCGG AGCAGGGAGC
  CTAAGTCCTT GGCCGAAAGC TAGGCTCACC ATGGTTCCGA CGGATTCCGC GTAGAGGAGA
  GAACCCCTCA CAATCCGCGC CGGGAAGCCA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323494026	CHEV_10_116500672	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239779297					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:116899521 () rs orientation: forward

Symbol	Name	Function Class
Cct2	chaperonin containing TCP1 subunit 2	within coordinates
Cpgi2223	CpG island 2223	within coordinates
Rr402250	regulatory region 402250	116 bp upstream
Rr439433	regulatory region 439433	137 bp proximal
Rr439434	regulatory region 439434	937 bp proximal
Rr439435	regulatory region 439435	1135 bp proximal
Rr439436	regulatory region 439436	1508 bp proximal
Tssr99381	transcription start site region 99381	558 bp upstream
Tssr99382	transcription start site region 99382	250 bp upstream
Tssr99383	transcription start site region 99383	125 bp downstream
Tssr99384	transcription start site region 99384	148 bp downstream