rs239785897 SNP Detail

Summary

• ID
  rs239785897
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81013328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTTTTTC GTGCTTTGGT
  CCCAATCAAT CCGGCATCTT TGCAGTGCCG AGGTGGCCGT GCACCTTGGC TTTGAATTCT
  TGTGCTGAGG TTATGTGACT TGAGCCTCAA GATAGGGTCT TCTAGCACAG GCTTGCTCTT
  AAGTGTCGCA GTTGTCGGTT TCGGCGTTTG TTTAGAGCTG TGGACACATC TGTGAACTTT
  W
  GATGCTTATT TCAGAGGTCC TGGGTTGTAC GTTTGAGTCA CACTGTGAGC TCAGCTCCAA
  TCTTGGGCCG ACATCTGGTT CCTGCCCCTG CTGTGGGGTG CTATTGACCC ACCGATGCCT
  GCCAAGTTGG GTTCCCAGAA TCAGCCTGGC TGCCCATCCC CCCACCACAG GTGAACTTCA
  CAGTAGATCA GATCCGTGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381032019	MGP_WTSI_10_80640239	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239785897					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381032019	MGP_WTSI_10_80640239	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81013328 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1950	CpG island 1950	within coordinates
Eef2	eukaryotic translation elongation factor 2	within coordinates
Gm67815	predicted gene, 67815	425 bp upstream
Rr402079	regulatory region 402079	814 bp downstream
Rr435542	regulatory region 435542	853 bp distal
Rr435543	regulatory region 435543	436 bp distal
Rr435544	regulatory region 435544	within coordinates
Snord37	small nucleolar RNA, C/D box 37	1467 bp upstream
Tssr94695	transcription start site region 94695	846 bp downstream
Tssr94696	transcription start site region 94696	199 bp upstream
Tssr94697	transcription start site region 94697	315 bp upstream
Tssr94698	transcription start site region 94698	555 bp upstream
Tssr94699	transcription start site region 94699	1656 bp upstream
Tssr94700	transcription start site region 94700	1840 bp upstream
Tssr94701	transcription start site region 94701	1900 bp upstream
Tssr98570	transcription start site region 98570	1884 bp downstream