rs239786891 SNP Detail

Summary

• ID
  rs239786891
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:71367507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAATTCTTA CCTGTCTTTG
  TTTTGTTTGT TTGTTTATTT GTTTTCTGAG ACAGGGTCTA AACTGTAGCC CAGGCTGGTC
  TGAAATTCAC TATTTAGCAC AGGCTGGCCT TGATTTTTTT TTTTTTTTTT TTTTTGGTTT
  TTCGAGACAG GGTTTTTCTG TGTAGTCCTG GCTGTCCTGG AACTCACTCT GTAGATCAGG
  Y
  TGGCCTCGAA CTCAGAAATC CGCCTGCCTC TGCCTCCCAA GTGCTGGGAT TAAAGGCGTG
  CGCCATCACC ACCCGGCTGA TGGGAGATTC TTTATGTCTT TCAAATTCTA CTTTGGCGTA
  TTAGTGTACC TTGCTGATCC TCGCCTGAGT TACTGCCTTG TTAAAAAATG AAACTGGTTT
  TCTAAAACCA GTTTCGTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	RF/J	SEA/GnJ	SM/J	ST/bJ	WSB/EiJ
ss386433160	MGP_WTSI_12_72421720	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	RF/J	SEA/GnJ	SM/J	ST/bJ	WSB/EiJ
rs239786891					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386433160	MGP_WTSI_12_72421720	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:71367507 () rs orientation: forward

Symbol	Name	Function Class
4930474H06Rik	RIKEN cDNA 4930474H06 gene	within coordinates
Cpgi4722	CpG island 4722	1821 bp distal
Dact1	dishevelled-binding antagonist of beta-catenin 1	626 bp downstream
Rr267971	regulatory region 267971	1907 bp distal
Rr267972	regulatory region 267972	1694 bp proximal